Hey kiddo, do you remember playing with your block toys? Imagine one block has unique shapes on four sides such as a star, a square, a circle, and a triangle. Now, we have a box with holes of the same shapes as the block.
Now imagine that the block is like a protein, a tiny part of a living organism that can do something specific. The box with the holes is like another molecule called a ligand. The ligand can only fit in one specific hole, just like the protein can only interact with a specific ligand.
The word orthogonal means they fit together perfectly, like puzzle pieces. So when the specific ligand and protein combine, they make a pair that works very well together, just like when the specific block is put in the right hole. This kind of pairing is called an orthogonal ligand-protein pair.
I hope that helps you understand what an orthogonal ligand-protein pair is!